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Sourdough Pumpkin Muffins with Chocolate Chips

Make these sourdough pumpkin muffins for friends, neighbors, family get-togethers – whatever you do, just make them! These muffins are so perfectly flavored and textured and they use all clean ingredients.

Related: Sourdough Pumpkin Cinnamon Rolls

Related: Pumpkin Spice Granola Bark Recipe

sourdough pumpkin muffin with chocolate chips broken in half with a bunch of other muffins in the back on a cake stand

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Although these muffins call for a sourdough starter, they don’t taste like sourdough at all. You can use an active sourdough starter or your discard. The starter just creates the perfectly moist and fluffy texture and is the acid that activates the baking soda.

If you don’t have a sourdough starter yet you could also use buttermilk for the same effect or:

Related: Sourdough starter from scratch tutorial

Sourdough Pumpkin Muffins ingredients

  • 3/4 cup coconut oil
  • 3 large eggs
  • 2 tsp vanilla extract
  • 2 cups coconut sugar
  • 30 oz pure, organic pumpkin puree
  • 1 cup sourdough starter (active or discard)
  • 2 1/2 cups all-purpose flour 
  • 1 tsp sea salt
  • 1 tsp baking soda
  • 1 tsp baking powder
  • 2 tbs pumpkin pie spice
  • 1 cup chocolate chips

Cinnamon Sugar Mixture

  • 1/4 cup coconut sugar
  • 1 tbs pumpkin pie spice

How to Make Sourdough Pumpkin Muffins

Instructions

  • Preheat your oven to 375 degrees F.
  • In a large bowl, whisk the oil, eggs, vanilla, sugar and pumpkin.
  • Use a spatula to fold in your sourdough starter.
stirring sourdough starter with pumpkin puree mixture in a large ceramic bowl with boos block cutting board in the back
  • Add the flour, salt, baking powder, baking soda and pumpkin pie spice. Mix until just combined (don’t overmix).
  • Gently fold in the chocolate chips.
  • Grease a muffin tin with coconut oil.
  • Pour the batter into the muffin tin filling about 3/4 full.
using an ice cream scoop to fill muffin tin with muffin batter
  • Mix the sugar and pumpkin spice in a small bowl.
  • Sprinkle the pumpkin spice sugar over the sourdough pumpkin muffin batter.
sourdough pumpkin muffins with pumpkin spice sugar on top
  • Bake for about 20 mins or until a toothpick inserted into the center of the muffins comes out clean.
  • Cool until the muffins loosen from the muffin tin and then rest on a cooling rack.
gently lifting the sourdough pumpkin muffins out of the muffin tin and placing on a cooling rack
  • Store in an airtight container at room temperature for about 3 days or freeze for up to 3 months.

Notes

  • Your sourdough starter doesn’t have to be active and bubbly. I make this recipe using my sourdough discard right after pulling it out of the fridge.
  • If you don’t have a sourdough starter yet, you can substitute the starter for buttermilk.

pumpkin sourdough muffin storage

These sourdough pumpkin muffins are best enjoyed within 3 days at room temperature. You could also freeze the muffins for up to three months in an airtight bag or container.

Can you freeze pumpkin bread?

Yes, you can freeze pumpkin bread in an airtight container for up to three months. To defrost, simply pull the loaf out of the freezer and let defrost at room temperature for a couple of hours.

Tips for making Sourdough Pumpkin Muffins

sourdough pumpkin muffin inside with chocolate chips peaking through sitting on blue and white china
  1. Don’t overmix the sourdough muffin batter. to prevent overmixing, start by mixing the wet ingredients, then gently fold in the dry ingredients.
  2. Use paper liners only if you aren’t planning on eating the muffins right away. If you’re planning on eating the muffins within 1-2 days, simply grease the muffin tin.
  3. Use an ice cream scoop to scoop the batter into the muffin tin.
  4. Don’t overfill your muffin tins. 3/4 full is the optimal amount of batter in order to get nicely domed muffin tops.
  5. Remove your muffins from the muffin tin after about 5 minutes. This will ensure that they wont crumble, but they won’t cook too long either.
  6. Don’t use pumpkin pie filling. Pumpkin pie filling is not the same thing as pumpkin puree. This recipe calls for pure pumpkin puree made from organic pumpkins. You don’t want all the added sugar and spices from pumpkin pie filling to overpower the ingredients other ingredients.

Related: sourdough donut recipe

how to make sourdough pumpkin muffins healthy

muffin batter filled up muffin tin with boos block cutting board and muffins cooling on cooling rack
  1. Use pure, organic pumpkin puree. If you have homemade pumpkin puree that’s even better!
  2. Substitute coconut sugar instead of white, cane sugar.
  3. Use a sourdough starter as the acid instead of buttermilk.
  4. Utilize quality flour like einkorn so the muffins are easily digestible.
  5. Mill your own grain to prevent using rancid flour.
  6. Make sure you’re using a healthy oil such as coconut oil.

How to make Long Fermented Muffins

sourdough pumpkin muffins sitting on burlap with cake stand in back

You can turn any sourdough muffin recipe into a long-fermented recipe. Long fermenting sourdough muffins make them even healthier as they become more easily digestible and provide great gut-healing bacteria.

All you’ll do is mix together the flour and sourdough starter with a little water the night before you want the muffins.

The amount of water you use depends on the type of flour you’re using for the muffins, but you’ll want about 6-10 tbs.

Cover the mixture with a towel and let sit for about 10 hours.

Then, mix all the other ingredients in (you’ll want to use a stand mixer for this as the dough will be quite thick).

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more Sourdough recipes

Roasted Garlic Sourdough Bread

Cardamom Sourdough Bread

Sourdough Pretzels

Sourdough Tortillas

Sourdough Babka with Chocolate Filling

free Sourdough muffins ebook

sourdough pumpkin muffin faq

What makes a muffin light and fluffy?

If you use room-temperature ingredients for your muffins, they will become light and fluffy after baking.

Is pumpkin puree the same as canned pumpkin?

Pumpkin puree and canned pumpkin can be the same thing, yes. However, pumpkin puree is not always canned – it can be freshly pureed at home.

Can I freeze pumpkin muffins?

Yes, you can freeze pumpkin muffins for up to 3 months. To defrost just pull out of the freezer and let sit at room temperature for a couple of hours until defrosted.

Why are storebought muffins bad for you?

Storebought muffins are usually loaded with lots of refined sugar and preservatives. It’s best to make homemade muffins so you can control what goes into them.

How long do muffins last in the fridge?

Muffins will last up to one week in the refrigerator.

Why do my muffins get sticky on top?

The older the muffin, the stickier the top. The sticky texture is from the moisture rising to the surface of the muffin. While the top is sticky, the inside becomes stale.

Pin it for later – Sourdough Pumpkin Muffins

These are the perfect muffins for fall. They are made with clean ingredients so you don't have to feel guilty eating these sourdough pumpkin muffins for breakfast!

Related: Sourdough Discard Muffins – Base Recipe

Related: Sourdough Monkey Bread

sourdough pumpkin muffin inside with chocolate chips peaking through sitting on blue and white china
Kyrie | Healthfully Rooted Home

Sourdough Pumpkin Muffins

These sourdough pumpkin muffins are so perfectly flavored and textured and they use all clean ingredients.
Prep Time 15 minutes
Cook Time 20 minutes
Total Time 35 minutes
Servings: 27 muffins
Course: Breakfast, Dessert, Snack
Cuisine: American
Calories: 135

Ingredients
  

  • 3/4 cup coconut oil
  • 3 large eggs
  • 2 tsp vanilla extract
  • 2 cups coconut sugar
  • 30 oz pumpkin puree pure, organic
  • 1 cup sourdough starter discard or active
  • 2 1/2 cups flour
  • 1 tsp sea salt
  • 1 tsp baking soda
  • 1 tsp baking powder
  • 2 tbs pumpkin pie spice
  • 1 cup chocolate chips
Cinnamon Sugar Topping
  • 1/4 cup coconut sugar
  • 1 tbs pumpkin pie spice

Equipment

  • Large bowl
  • Muffin tin
  • Spatula
  • whisk

Method
 

  1. Preheat your oven to 375 degrees F.
  2. In a large bowl, whisk the oil, eggs, vanilla, sugar and pumpkin.
  3. Use a spatula to fold in your sourdough starter.
  4. Add the flour, salt, baking powder, baking soda and pumpkin pie spice. Mix until just combined (don't overmix).
  5. Gently fold in the chocolate chips.
  6. Grease a muffin tin with coconut oil.
  7. Pour the batter into the muffin tin filling about 3/4 full.
  8. Mix the sugar and pumpkin spice in a small bowl.
  9. Sprinkle the pumpkin spice sugar over the sourdough pumpkin muffin batter.
  10. Bake for about 20 mins or until a toothpick inserted into the center of the muffins comes out clean.
  11. Cool for about 5 minutes until the muffins loosen from the muffin tin and then rest on a cooling rack.
  12. Store in an airtight container at room temperature for about 3 days or freeze for up to 3 months.

Notes

  • Your sourdough starter doesn’t have to be active and bubbly. I make this recipe using my sourdough discard right after pulling it out of the fridge.
  • If you don’t have a sourdough starter yet, you can substitute the starter for buttermilk.
  • Don’t overmix the sourdough muffin batter. to prevent overmixing, start by mixing the wet ingredients, then gently fold in the dry ingredients.
  • Use paper liners only if you aren’t planning on eating the muffins right away. If you’re planning on eating the muffins within 1-2 days, simply grease the muffin tin.
  • Use an ice cream scoop to scoop the batter into the muffin tin.
  • Don’t overfill your muffin tins. 3/4 full is the optimal amount of batter in order to get nicely domed muffin tops.
  • Remove your muffins from the muffin tin after about 5 minutes. This will ensure that they won’t crumble, but they won’t cook too long either.
  • Don’t use pump pie filling. Pumpkin pie filling is not the same thing as pumpkin puree. This recipe calls for pure pumpkin puree made from organic pumpkins. You don’t want all the added sugar and spices from pumpkin pie filling to overpower the ingredients I call for.

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